Dranch: TrinityOS Step by step, example driven, HOWTO on building a Linux box with an aim towards strong security. Also, links to resources and mailing lists.
Hacking Linux Exposed Companion Website to Hacking Linux Exposed, Osborne/McGraw-Hill. Source code from the book, updates, and other tools to secure your Linux system.
Linux Audit and Intrusion Detection InterSect Alliance are the creators of the SNARE Linux C2-style Audit module, and have a consulting background in advanced audit analysis, intrusion detection systems, and forensics for Unix and other operating systems.
Penetrator Megablaster A kernel module that detects and stops overflow attacks, like Linux Buffer Overflow attack security, which aim to get an interactive access to the system.
Linuxbroker - Security Linuxbroker provides all types of resources you need like Linux newsgroups search engine, daily news, howtos, applications releases tracking and security alerts.
Sardonix.org DARPA-funded community project to audit the source of all Linux applications for security vulnerabilities.
Password Management System Designed for System Administrators, to handle user logins for several computers running Linux. It works with a console interface, based on the CDK library that uses ncurses. Import data from csv files and export to text files with a free definable format.
LinuxSecure This site on Linux and security covers firewalls (iptables), intrusion detection systems (snort), securing services, and Linux security in general. The aim is to provide information about protection, detection, and reaction with respect to attacks.